Clinica can be installed on Mac OS X and Linux (CentOS or Debian/Ubuntu) machines, and possibly on Windows computers with a Linux Virtual Machine. We assume that users installing and using Clinica are comfortable with using the command line.
- Anatomical MRI (T1-weighted)
t1-freesurfer-*- Cortical surface, subcortical structures and volumetrics using FreeSurfer
t1-spm-full-prep- Tissue segmentation and spatial normalization using SPM
- Diffusion MRI (DWI)
pet-preprocessing-volume- Preprocessing of volumetric PET data using SPM: registration to T1 MRI, partial volume correction, SUVR computation, spatial normalization
statistics-surface- Surface-based mass-univariate analysis with SurfStat
- Machine Learning
- Online neuroimaging databases (ADNI, AIBL, OASIS) to BIDS converters
- Data handling tools for BIDS and CAPS compliant datasets
Clinica is distributed under the terms of the MIT license given here.
For publications or communications using Clinica, please include the following text:
Analyses were performed using the Clinica software platform (www.clinica.run) developed by the ARAMIS Lab (www.aramislab.fr).
Each pipeline's page includes text to cite the software packages that are used by Clinica. Use them depending on the specific pipelines that you used (for example, citing SPM when using the
Clinica is a software for research studies. It is not intended for use in medical routine